Welcome to ftp.nluug.nl Current directory: /pub/ftp/os/Linux/distr/salix/x86_64/extra-15.0/source/academic/STAR/ |
|
Contents of README:STAR aligns short and long RNA-seq reads to a reference genome using uncompressed suffix arrays, resulting in fast, accurate mapping. STAR is capable of unbiased de novo detection of canonical splice junctions, can discover non-canonical splices and chimeric (fusion) transcripts and can map full-length RNA sequences. Comes with STARsolo for: mapping, demultiplexing and gene quantification for single cell RNA-seq (See STARmanual). The make command for building the program assumes that the cpu is supporting AVX extensions, included in intel processors since Sandy Bridge (2008) and in AMD cpus since Bulldozer (2011). See the Slackbuild if other processors can be supported. Reference: https://www.ncbi.nlm.nih.gov/pubmed/23104886 LIMITATIONS This release was tested with the default parameters for human and mouse genomes. Mammal genomes require at least 16GB of RAM, ideally 32GB. Please contact the author for a list of recommended parameters for much larger or much smaller genomes. |
Name Last modified Size
Parent Directory - README 03-Jun-2022 15:34 1.0K STAR-2.7.10a.tar.gz 03-Jun-2022 15:35 12M STAR.SlackBuild 11-Mar-2022 06:34 4.4K STAR.info 03-Jun-2022 15:34 313 slack-desc 03-Jun-2022 15:34 1.0K
NLUUG - Open Systems. Open Standards
Become a member
and get discounts on conferences and more, see the NLUUG website!