Bio-Mitomaster

THIS IS AN INITIAL UPLOAD THAT IS NOT QUITE FINISHED.  THIS CODE WORKS, BUT I AM STILL IMPORTING ALIGNMENT CODE FROM AN EARLIER VERSION.  IT SHOULD BE COMPLETED IN MAY 2010.

Bio::Mitomaster is a software framework that makes it easy to create programs that analyze mitochondrial genomic data of species for which there is an established reference sequence.  It differs from more general frameworks, such as Bio::Perl, by incorporating a systematic method to make use of the species meta-data (e.g. reference sequence, locus positions, etc.).  You can get more information from the included manual (perldoc Bio::Mitomaster::Manual).


INSTALLATION

To install this module, run the following commands:

	perl Build.PL
	./Build
	./Build test
	./Build install


SUPPORT AND DOCUMENTATION

After installing, you can find documentation for this module with the
perldoc command.

    perldoc Bio::Mitomaster::Manual

You can also look for information at:

    RT, CPAN's request tracker
        http://rt.cpan.org/NoAuth/Bugs.html?Dist=Bio-Mitomaster

    AnnoCPAN, Annotated CPAN documentation
        http://annocpan.org/dist/Bio-Mitomaster

    CPAN Ratings
        http://cpanratings.perl.org/d/Bio-Mitomaster

    Search CPAN
        http://search.cpan.org/dist/Bio-Mitomaster/



COPYRIGHT AND LICENCE

Copyright (C) 2009 Marty Brandon

This program is free software; you can redistribute it and/or modify it
under the same terms as Perl itself.