Self-Controlled Case Series


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Documentation for package ‘SelfControlledCaseSeries’ version 6.0.1

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checkEventExposureIndependenceAssumption Check diagnostic for event-dependent exposure
checkEventObservationIndependenceAssumption Check diagnostic for event-dependent observation end
checkRareOutcomeAssumption Check if rare outcome assumption is violated
checkTimeStabilityAssumption Check stability of outcome rate over time
computeMdrr Compute the minimum detectable relative risk
computePreExposureGainP Compute P for pre-exposure risk gain
computeTimeStability Check stability of outcome rate over time
convertJsonToSccsAnalysesSpecifications Convert JSON to SccsAnalysesSpecifications
convertSccsAnalysesSpecificationsToJson Convert SccsAnalysesSpecifications to JSON
convertUntypedListToSccsAnalysesSpecifications Convert untyped list to SccsAnalysesSpecifications
createAgeCovariateSettings Create age covariate sesettings#' Create age covariate settings
createCalendarTimeCovariateSettings Create calendar time settings
createControlIntervalSettings Create control interval settings
createCreateSccsIntervalDataArgs Create a parameter object for the 'createSccsIntervalData()' function
createCreateScriIntervalDataArgs Create a parameter object for the 'createScriIntervalData()' function
createCreateStudyPopulationArgs Create a parameter object for the 'createStudyPopulation()' function
createDefaultSccsMultiThreadingSettings Create default SelfControlledCaseSeries multi-threading settings
createEraCovariateSettings Create era covariate settings
createExposure Create exposure definition
createExposuresOutcome Create a exposures-outcome combination.
createFitSccsModelArgs Create a parameter object for the function fitSccsModel
createGetDbSccsDataArgs Create a parameter object for the function getDbSccsData
createResultsDataModel Create the results data model tables on a database server.
createSccsAnalysesSpecifications Create full SCCS analysis specifications
createSccsAnalysis Create a SelfControlledCaseSeries analysis specification
createSccsDiagnosticThresholds Create SCCS diagnostics thresholds
createSccsIntervalData Create SCCS era data
createSccsMultiThreadingSettings Create SelfControlledCaseSeries multi-threading settings
createSccsSimulationSettings Create SCCS simulation settings
createScriIntervalData Create Self-Controlled Risk Interval (SCRI) era data
createSeasonalityCovariateSettings Create seasonality settings
createSimulationRiskWindow Create a risk window definition for simulation
createStudyPopulation Create a study population
cyclicSplineDesign Create a design matrix for a cyclic spline
exportToCsv Export SCCSresults to CSV files
fitSccsModel Fit the SCCS model
getAttritionTable Get the attrition table for a population
getDataMigrator Get database migrations instance
getDbSccsData Load data for SCCS from the database
getDiagnosticsSummary Get a summary report of the analyses diagnostics
getFileReference Get file reference
getModel Output the full model
getResultsDataModelSpecifications Get specifications for SelfControlledCaseSeries results data model
getResultsSummary Get a summary report of the analyses results
hasAgeEffect Does the model contain an age effect?
hasCalendarTimeEffect Does the model contain an age effect?
hasSeasonality Does the model contain an age effect?
isSccsData Check whether an object is a SccsData object
isSccsIntervalData Check whether an object is a SccsIntervalData object
loadExposuresOutcomeList Load a list of 'ExposuresOutcome' from file
loadSccsAnalysisList Load a list of sccsAnalysis from file
loadSccsData Load the cohort method data from a file
loadSccsIntervalData Load the cohort method data from a file
migrateDataModel Migrate Data model
plotAgeEffect Plot the age effect
plotAgeSpans Plot the age ranges spanned by each observation period.
plotCalendarTimeEffect Plot the calendar time effect
plotCalendarTimeSpans Plot the calendar time ranges spanned by each observation period.
plotEventObservationDependence Plot time from event to observation end for censored and uncensored time.
plotEventToCalendarTime Plot the ratio of observed to expected events over calendar time.
plotExposureCentered Plot information centered around the start of exposure
plotSeasonality Plot the seasonality effect
runSccsAnalyses Run a list of analyses
saveExposuresOutcomeList Save a list of 'ExposuresOutcome' to file
saveSccsAnalysisList Save a list of SccsAnalysis to file
saveSccsData Save the cohort method data to file
saveSccsIntervalData Save the cohort method data to file
SccsData SCCS Data
SccsData-class SCCS Data
SccsIntervalData SCCS Interval Data
SccsIntervalData-class SCCS Interval Data
show-method SCCS Data
show-method SCCS Interval Data
simulateSccsData Simulate SCCS data
summary-method SCCS Data
summary-method SCCS Interval Data
uploadResults Upload results to the database server.