Self-Controlled Case Series

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Documentation for package ‘SelfControlledCaseSeries’ version 6.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

checkEventExposureIndependenceAssumption	Check diagnostic for event-dependent exposure
checkEventObservationIndependenceAssumption	Check diagnostic for event-dependent observation end
checkRareOutcomeAssumption	Check if rare outcome assumption is violated
checkTimeStabilityAssumption	Check stability of outcome rate over time
computeMdrr	Compute the minimum detectable relative risk
computePreExposureGainP	Compute P for pre-exposure risk gain
computeTimeStability	Check stability of outcome rate over time
convertJsonToSccsAnalysesSpecifications	Convert JSON to SccsAnalysesSpecifications
convertSccsAnalysesSpecificationsToJson	Convert SccsAnalysesSpecifications to JSON
convertUntypedListToSccsAnalysesSpecifications	Convert untyped list to SccsAnalysesSpecifications
createAgeCovariateSettings	Create age covariate sesettings#' Create age covariate settings
createCalendarTimeCovariateSettings	Create calendar time settings
createControlIntervalSettings	Create control interval settings
createCreateSccsIntervalDataArgs	Create a parameter object for the 'createSccsIntervalData()' function
createCreateScriIntervalDataArgs	Create a parameter object for the 'createScriIntervalData()' function
createCreateStudyPopulationArgs	Create a parameter object for the 'createStudyPopulation()' function
createDefaultSccsMultiThreadingSettings	Create default SelfControlledCaseSeries multi-threading settings
createEraCovariateSettings	Create era covariate settings
createExposure	Create exposure definition
createExposuresOutcome	Create a exposures-outcome combination.
createFitSccsModelArgs	Create a parameter object for the function fitSccsModel
createGetDbSccsDataArgs	Create a parameter object for the function getDbSccsData
createResultsDataModel	Create the results data model tables on a database server.
createSccsAnalysesSpecifications	Create full SCCS analysis specifications
createSccsAnalysis	Create a SelfControlledCaseSeries analysis specification
createSccsDiagnosticThresholds	Create SCCS diagnostics thresholds
createSccsIntervalData	Create SCCS era data
createSccsMultiThreadingSettings	Create SelfControlledCaseSeries multi-threading settings
createSccsSimulationSettings	Create SCCS simulation settings
createScriIntervalData	Create Self-Controlled Risk Interval (SCRI) era data
createSeasonalityCovariateSettings	Create seasonality settings
createSimulationRiskWindow	Create a risk window definition for simulation
createStudyPopulation	Create a study population
cyclicSplineDesign	Create a design matrix for a cyclic spline
exportToCsv	Export SCCSresults to CSV files
fitSccsModel	Fit the SCCS model
getAttritionTable	Get the attrition table for a population
getDataMigrator	Get database migrations instance
getDbSccsData	Load data for SCCS from the database
getDiagnosticsSummary	Get a summary report of the analyses diagnostics
getFileReference	Get file reference
getModel	Output the full model
getResultsDataModelSpecifications	Get specifications for SelfControlledCaseSeries results data model
getResultsSummary	Get a summary report of the analyses results
hasAgeEffect	Does the model contain an age effect?
hasCalendarTimeEffect	Does the model contain an age effect?
hasSeasonality	Does the model contain an age effect?
isSccsData	Check whether an object is a SccsData object
isSccsIntervalData	Check whether an object is a SccsIntervalData object
loadExposuresOutcomeList	Load a list of 'ExposuresOutcome' from file
loadSccsAnalysisList	Load a list of sccsAnalysis from file
loadSccsData	Load the cohort method data from a file
loadSccsIntervalData	Load the cohort method data from a file
migrateDataModel	Migrate Data model
plotAgeEffect	Plot the age effect
plotAgeSpans	Plot the age ranges spanned by each observation period.
plotCalendarTimeEffect	Plot the calendar time effect
plotCalendarTimeSpans	Plot the calendar time ranges spanned by each observation period.
plotEventObservationDependence	Plot time from event to observation end for censored and uncensored time.
plotEventToCalendarTime	Plot the ratio of observed to expected events over calendar time.
plotExposureCentered	Plot information centered around the start of exposure
plotSeasonality	Plot the seasonality effect
runSccsAnalyses	Run a list of analyses
saveExposuresOutcomeList	Save a list of 'ExposuresOutcome' to file
saveSccsAnalysisList	Save a list of SccsAnalysis to file
saveSccsData	Save the cohort method data to file
saveSccsIntervalData	Save the cohort method data to file
SccsData	SCCS Data
SccsData-class	SCCS Data
SccsIntervalData	SCCS Interval Data
SccsIntervalData-class	SCCS Interval Data
show-method	SCCS Data
show-method	SCCS Interval Data
simulateSccsData	Simulate SCCS data
summary-method	SCCS Data
summary-method	SCCS Interval Data
uploadResults	Upload results to the database server.