# Generated by roxygen2: do not edit by hand

export(addHost)
export(addViralObs)
export(concatViralPop)
export(createAViralPop)
export(createHost)
export(createIndex)
export(demo.SMITIDstruct.run)
export(diversity.pDistance)
export(diversity.sfs)
export(getCov)
export(getDate)
export(getDiversity.pDistance)
export(getDiversity.sfs)
export(getInfosByHostAndTime)
export(getStates)
export(getTimeLine)
export(getTimestamp)
export(getTransmissionTree)
export(is.StringDate)
export(is.juliendate)
export(is.timestamp)
export(isInCode)
export(loadCoords)
export(loadCovs)
export(loadHost)
export(loadStates)
export(loadTree)
export(loadTreeDF)
export(loadViralObs)
export(loadViralPop)
export(loadViralPopSet)
export(mergeCode)
export(plotDiversity.pDistance)
export(plotDiversity.sfs)
export(simulateStates)
exportClasses(Host)
exportClasses(ViralPop)
import(Biostrings)
import(ggplot2)
import(methods)
import(sf)
importFrom(utils,read.table)
