detect_damage	detect_damage
get_organism_indices	get_organism_indices
plot_altered_counts	plot_altered_counts
plot_detection_outcome	plot_detection_outcome
plot_ribosomal_penalty	plot_ribosomal_penalty
plot_simulation_outcome	plot_simulation_outcome
plot_unaltered_counts	plot_unaltered_counts
select_penalty	select_penalty
simulate_counts	simulate_counts
test_counts	test_counts
