change_data_format_to_longer
                        Data format changer
data_binding            Merge all the dataframes coming out from the
                        QuPath
generate_qupath_script
                        Generate the groovy script used for the
                        analysis
get_QC_plots            Plot some QC plots to define that everything
                        ran correctly
get_QC_plots_parsed_merged_data
                        Plot QC plots and calculate statistics for
                        bound data
make_count_dataframe    Count the main marker expression
make_run_config         Generates and use a config txt file
string_parsing          Parse image filenames to extract metadata
