372cbe3689e82911e621b8d59a6246e1 *DESCRIPTION
9e478b1fb1bbb03cad3aad1bed6f7eee *NAMESPACE
e9d9863889bfc2d807233e3dfe576b11 *NEWS.md
935f5d69538f0a0b7c71d17a0995d0d6 *R/data.R
35ebe418dd79d17661182c4670f2e5b9 *R/detect_damage.R
e6881d5f2cc69b101c6156d4ce4607aa *R/plot_outcome.R
6ed649ebb32cb02a8a634aeb483ba13c *R/select_penalty.R
1c3f84d3432df24ea0373d9e47a79dc1 *R/simulate_counts.R
206ef36a2cb2208f0a6fd4bd95ed2a23 *R/utils.R
76161b65639451c966be75488458b3c3 *build/partial.rdb
b4c4990cb346cf3be2ace5e0c04dc820 *build/vignette.rds
481ac60a84d1739434f781358668b460 *data/test_counts.rda
3df917ac51dd5a4da91c22b7b898057a *inst/WORDLIST
669ec8e7eb67edfd99d19dea4b91b6dc *inst/doc/detection-vignette.R
0624c6569d5fba5524a90b79a72938e2 *inst/doc/detection-vignette.Rmd
11c755758c7d3ed7bf527467fb485c41 *inst/doc/detection-vignette.html
0c001123c5cd2be729fd14805fa6b7fb *man/detect_damage.Rd
de05c50ac9140d4ac298a5fc8e305de8 *man/figures/logo.svg
50c50e46f352e3cee396b25511bc4aba *man/figures/plot.svg
f303fc22bad1d6b07f4af105eb5d64b7 *man/figures/ribosome_penalty_alignment.svg
2cd5321e9fbc15a49ec6cbc97f10de9e *man/get_organism_indices.Rd
5db210e84d32ee678ab3ef872ee8c35d *man/plot_altered_counts.Rd
aeb489012f54be2b1abaecee850e8814 *man/plot_detection_outcome.Rd
a8b6eeb357990212dfcebe2b31335a99 *man/plot_ribosomal_penalty.Rd
389ee1f836792f20c3c0723068cc5f39 *man/plot_simulation_outcome.Rd
31af4fc59dc46d5ac9adc794a7421b69 *man/plot_unaltered_counts.Rd
32b9e9ab092292129043e0af54be149c *man/select_penalty.Rd
3167ba792f5a23244da2ec1355f729b2 *man/simulate_counts.Rd
d5b48f358e35d830712183ac1807dfe6 *man/test_counts.Rd
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
0624c6569d5fba5524a90b79a72938e2 *vignettes/detection-vignette.Rmd
