bb21c40eff5d9072481ccd1ab8213a5e *DESCRIPTION
e552acaae5b8c5e8212238421a43ace9 *NAMESPACE
9c4a84dc8451b933f533d30a40f1f97b *NEWS.md
e7742daa1bf6aa4192bff19b4bd279c0 *R/GEX_DEgenes.R
ec5ac540ebb1c92cf7c12e818c25ef87 *R/GEX_GSEA.R
9a58130297b363c0e1539a175ab3e3d5 *R/GEX_cluster_genes.R
8058f2225ec1afbbcba3d314f412bd6d *R/GEX_cluster_genes_heatmap.R
9c8324c50cebd774126662deb9a684ac *R/GEX_cluster_membership.R
9d9581f0f684c9d3c8ffea2532635a4f *R/GEX_coexpression_coefficient.R
cd9a860a72f33be3763b1ed8399039de *R/GEX_dottile_plot.R
6786479660294ff818aecd680f403297 *R/GEX_gene_visualization.R
da4691f7074d9fe59f553cea29164803 *R/GEX_heatmap.R
4e9226ca56025845b83b4212e81c0fc2 *R/GEX_lineage_trajectories.R
79a30e67a73fb3cc3b0528d19447bc57 *R/GEX_pairwise_degs.R
3cc2405cbc6d3a9231d74412a372f858 *R/GEX_phenotype.R
0cf27dac7871e344915a7bef77ed5bd3 *R/GEX_phenotype_per_clone.R
3e1c91b377bd7202062653016320af23 *R/GEX_proportions_barplot.R
c7a196d09a0c2498f3e358b66a0ae68b *R/GEX_scatter_coexpression.R
57dea5dfe302846be6f4d79b5233c44a *R/GEX_volcano.R
d6ec02c5d58214102c9b2c5988da058c *R/PlatypusDB_AIRR_to_VGM.R
8ad99271f6ec26a29ac0a0857c9a945b *R/PlatypusDB_VGM_to_AIRR.R
3ca164da090d10b10cd3ebefffb79c3a *R/PlatypusDB_load_from_disk.R
22d50a4ce8c12bf8f010b5f22e33193b *R/Platypus_data.R
ab76f997ff79d3937b8e529db9ad07aa *R/VDJ_GEX_clonotype_clusters_circos.R
e834839ac76d2a5dc9bcf1c0f0032412 *R/VDJ_GEX_matrix.R
d30e7336adc59979b91e3123388b3102 *R/VDJ_GEX_overlay_clones.R
f5b825eed6a73010e84c6cb746fda6a5 *R/VDJ_GEX_stats.R
d87c8509e4f5f904a0eb1e4367f4efd3 *R/VDJ_VJ_usage_circos.R
0a92d7e51ef9152a936f6b8765e336a2 *R/VDJ_Vgene_usage.R
7a21e72a6b9e3e3533755630fb349a53 *R/VDJ_Vgene_usage_barplot.R
a6c5cc35fe5f0bebbd3eed99b906beb4 *R/VDJ_Vgene_usage_stacked_barplot.R
d6f779833d40ffd13f42007809aa227b *R/VDJ_abundances.R
09b14a7a931b43db1c73812a6bd78623 *R/VDJ_alpha_beta_Vgene_circos.R
01de68600cca334b4562aacc471a22fc *R/VDJ_antigen_integrate.R
41d81b2c54ae7d19e76d22945e8a565e *R/VDJ_assemble_for_PnP.R
d998e1c501d539aeae399fb9df47c19a *R/VDJ_build.R
c48fa6dcd86fe1a6a2b23bb108fa1a12 *R/VDJ_call_enclone.R
68e04f131b7d205a824b0ba012ba8c03 *R/VDJ_circos.R
64bd90f52a64817eb875e926b1c63a75 *R/VDJ_clonal_barplot.R
b4968c685094addcff9f74e5e0e53819 *R/VDJ_clonal_donut.R
b32c94255391ed9cb09014ec4d48683e *R/VDJ_clonal_expansion.R
e602d336f67d7fa13a05bdcb8bbbaf85 *R/VDJ_clonotype.R
2ead84dbe290a3cca7b1e3d7fe7d936e *R/VDJ_clonotype_v3_w_enclone.R
22e9c12b3b590668a5807136a9e8c95e *R/VDJ_contigs_to_vgm.R
ec2f9e81a7cbdada7981f36af039d14a *R/VDJ_db_annotate.R
0a7b69f8deeaa2c93f7a444f51411036 *R/VDJ_db_load.R
ea0556f559f308f765ffa191739c4675 *R/VDJ_diversity.R
44a2da29bb050b9f4c56552bdbe6bc9d *R/VDJ_dynamics.R
91bac35f287382702d6887ca8f42d2ab *R/VDJ_expand_aberrants.R
adaf66de7535059e45a8c60b8ec3236a *R/VDJ_extract_germline_MIXCR.R
d73de1fae517286d5c5125b6f93019d2 *R/VDJ_extract_germline_consensus_ref.R
22da682170baffe547ae18b6be8a95f2 *R/VDJ_get_public.R
6937388873fd3e4afde1398d0b741684 *R/VDJ_kmers.R
0e4229465958a0db4aef865b1439e594 *R/VDJ_logoplot_vector.R
f6a1cf4ff6150338e4f59e835dc03032 *R/VDJ_network.R
3798b4e27c5657f0453ef9530e74711a *R/VDJ_ordination.R
79e1b03f04cfe683c024fec15bbc78ba *R/VDJ_overlap_heatmap.R
85cfdccd395960c1acc83aaa91a3b166 *R/VDJ_phylogenetic_trees.R
5c0668552e1a3337f53d4b4005077945 *R/VDJ_phylogenetic_trees_plot.R
ea8c6d27993d3bb5a6f3355b84b7570a *R/VDJ_plot_SHM.R
11f830336e39adc9bf3837c9b424536c *R/VDJ_public.R
40ca941b2710e03ab433121428ea3553 *R/VDJ_rarefaction.R
f0cbcc86829dbe9fa8e2f906908d04ee *R/VDJ_variants_per_clone.R
8bee74b9f0f5762061af2c00739257c0 *R/VGM_build.R
78933d988371b08440cab75680dda745 *R/VGM_expand_featurebarcodes.R
f5b69e761848921922896eedc2c318f8 *R/VGM_expanded_clones.R
67a11c8e00e2a7f594324c2908c213ae *R/VGM_integrate.R
2ae19671939880ded70dbbdf00e9f895 *README.md
e39047a48aa92a9eca765b144f016daa *build/vignette.rds
a0bdb1b72af013630cd702c8cd539847 *data/small_vdj.rda
df71f89edb06769c3f0fa8ff89d5695d *data/small_vgm.rda
e431fea99c58bee3c2c828880444d630 *inst/doc/PlatypusV3_agedCNS.R
ed2278a52f3f288941de4415bef05726 *inst/doc/PlatypusV3_agedCNS.Rmd
f593a87945d2cbaba1c831c63274bc8b *inst/doc/PlatypusV3_agedCNS.html
90e00f7832a190746f9da30866fdd5a6 *man/GEX_DEgenes.Rd
d449f54245cb58a78b3e5341b9b2b7d5 *man/GEX_GSEA.Rd
4612fd7546d35c16e72d3d6f62cf8d05 *man/GEX_cluster_genes.Rd
13a88fcdaf58c5213bcde2ed25fa90b4 *man/GEX_cluster_genes_heatmap.Rd
d2fcf283560311c52a6bcee19231ecb8 *man/GEX_cluster_membership.Rd
1b18b674b8b23913d9ca5621da85c536 *man/GEX_coexpression_coefficient.Rd
eb2c64b248a74422d2a615ef40edd1a5 *man/GEX_dottile_plot.Rd
fe011133b60a79f6c7151aa11a0935c6 *man/GEX_gene_visualization.Rd
f947e65281e4594dc946bb757f59392f *man/GEX_heatmap.Rd
4cda39a39dac6780669dceabdb286dc7 *man/GEX_lineage_trajectories.Rd
edf6946cf3d62bc071fe7896e2271d95 *man/GEX_pairwise_DEGs.Rd
709dc317536c4cb9aa4694a2060ba136 *man/GEX_phenotype.Rd
00fd1fb3bb92c86cd00847f397605f88 *man/GEX_phenotype_per_clone.Rd
244236591ac7685505f75b7cfa49a553 *man/GEX_proportions_barplot.Rd
1a6f308f87d602dd077a1c01d735c9cd *man/GEX_scatter_coexpression.Rd
68b613c6a08954b3e1aea6ed3f10ce55 *man/GEX_volcano.Rd
01078ee5d58c01750fc2d14928e9953e *man/PlatypusDB_AIRR_to_VGM.Rd
3e9d42073d1edd1c1c6452429ebab43a *man/PlatypusDB_VGM_to_AIRR.Rd
59aee06b7b6e89581b2c56bd444d2533 *man/PlatypusDB_load_from_disk.Rd
f5cf58004beb023646d69366e609f409 *man/VDJ_GEX_clonotype_clusters_circos.Rd
6c2155fa60837ca2c136483166275d1c *man/VDJ_GEX_matrix.Rd
2ddb6f8dd7c4f8fcd5ca3cd89eae8896 *man/VDJ_GEX_overlay_clones.Rd
597ea74daab2fa456e885f730eaff4e1 *man/VDJ_GEX_stats.Rd
5241d2c8d64795d9ca1cadf359e18460 *man/VDJ_VJ_usage_circos.Rd
b2c04a7e90436d1c926ab3b7cd04b87d *man/VDJ_Vgene_usage.Rd
6f144425dfcd57c9062f6ee518710f3c *man/VDJ_Vgene_usage_barplot.Rd
c8668ca39a79bd44fd103b8b4fe2e5d9 *man/VDJ_Vgene_usage_stacked_barplot.Rd
c2c0e6054a191e03fcd0e3ac94fe2c9e *man/VDJ_abundances.Rd
31c5e288751c204f1159e2cef5218724 *man/VDJ_alpha_beta_Vgene_circos.Rd
4b8f83000c70feaa44e0c199ca969027 *man/VDJ_antigen_integrate.Rd
a2b10ee66014dc0377661a653d960511 *man/VDJ_assemble_for_PnP.Rd
17b25030d6922cd2683feef32cb1c3d1 *man/VDJ_build.Rd
0ad071aba79deffb5482c42654a58c50 *man/VDJ_call_enclone.Rd
5a341f2fb0226cc1410bff571dc80711 *man/VDJ_circos.Rd
087d6a9e154529ff9d3185db13573aa3 *man/VDJ_clonal_barplot.Rd
6d48f4e3ef4deac862496dd0a31efdb6 *man/VDJ_clonal_donut.Rd
5e6dfd69ef600dd9b35b522d8c4b7ad2 *man/VDJ_clonal_expansion.Rd
0f9d4a4a6b1e0f83cfcb546029ab4736 *man/VDJ_clonotype.Rd
012bf752729a06e54f8ac4aaf193b62c *man/VDJ_clonotype_v3_w_enclone.Rd
e346f5c2a54efbd3821e80d0a31e1352 *man/VDJ_contigs_to_vgm.Rd
72de5b61baa11ed910d0d3092a0a7f41 *man/VDJ_db_annotate.Rd
13b84889d780e01ddcc85fc96504c7bc *man/VDJ_db_load.Rd
e034bf70f9e69df8ed89af99e021ff10 *man/VDJ_diversity.Rd
6bdf98035328fa3dbde82b3819da0578 *man/VDJ_dynamics.Rd
24634526f7d1bf5cfe91f337c46a5fdd *man/VDJ_expand_aberrants.Rd
39704a867e95b7de431fbe18609466de *man/VDJ_extract_germline_consensus_ref.Rd
195b21a778df6a81b85f61fe3b2c849f *man/VDJ_germline.Rd
aa813fa6eb2227df58929013213e2f7a *man/VDJ_get_public.Rd
fdc34b8f382ec7b864c47f8ff8be3b9f *man/VDJ_kmers.Rd
c5f07b694a9d2c460152d9f8fa1ac291 *man/VDJ_logoplot_vector.Rd
1723e359f2580af6647ac949d1c7d38e *man/VDJ_network.Rd
3e5d097d0dd99ca0df57af4ab8a6a0ca *man/VDJ_ordination.Rd
e355a58e52b6053746127524d8e10a2b *man/VDJ_overlap_heatmap.Rd
8d1f751d4d5f80bc4f6d24f0dad67079 *man/VDJ_phylogenetic_trees.Rd
06c4faceeaa9236366eb8a211a62f4fe *man/VDJ_phylogenetic_trees_plot.Rd
ad92ae138060e1db267f2a16243ad87c *man/VDJ_plot_SHM.Rd
6957bcdaca8249dd63d6703606af4490 *man/VDJ_public.Rd
18082cc086e44ffd20e0147bbe832da2 *man/VDJ_rarefaction.Rd
e92e67eba52471d385201e60735e0e61 *man/VDJ_variants_per_clone.Rd
992412594a2613e48ea0302e2d60479c *man/VGM_build.Rd
2ff371e4f598e6661522cf8e01a1ec2c *man/VGM_expand_featurebarcodes.Rd
c5a82f9d14f025b6eafd592ef1676716 *man/VGM_expanded_clones.Rd
373e85ae3babcc12f69b946cda9093e8 *man/VGM_integrate.Rd
a234cb64416f693c35f3361b3eaf50d8 *man/small_vdj.Rd
455ccdb6a5fdee83224efbcb91ccfe55 *man/small_vgm.Rd
ed2278a52f3f288941de4415bef05726 *vignettes/PlatypusV3_agedCNS.Rmd
