5f1bcbfac79f70b1cabdfeb98c46f9b0 *DESCRIPTION
d44f16e401162b91bd62872c17b56908 *NAMESPACE
49f248d18df9c23c48badc02657944d5 *R/Optimization_Rvalue.R
9e37272413d65d0b1dcbf6a04b5a98e3 *R/RTIGER-Class.R
f8a6808fe2e223e3fa48d22709161b37 *R/aux_Fun.R
08f10781176f6beffed992aa08f7b20b *R/data.R
ed689d0d8200864a5d026639ac3bcd78 *R/developer.R
4a782a2f2bc8a2ed1e787032425e94ae *R/export2IGV.R
8ff2e377fdd5eabb4fd06b5a0eafd44c *R/fit.R
933ce9ab08e159f58acc646ccae1df7b *R/globals.R
bc74567a40e4d40c27f9cd1f0a46082b *R/loadfun.R
5bec6940eb82efa71fdf4c2b4a81a4c0 *R/mainfun.R
f400e7b6d96c28a92f1dfe35ad659548 *R/plotCO.R
01939f18804fb75ddbc4a811262c8cf1 *R/plotGenotype.R
a8cbc75c1927d1caf5a0d9b0311a8a1e *R/runningFreqPlot.R
9c06c861064ee5b31b08488d5f9fff15 *R/setupJulia.R
f737901bac5e9b89e4bdb6e758ee2026 *R/state_ratios.R
da7e73ef244dc7eef5c59a9116fa6024 *README.md
d45e51c7fed4352f72afdee806787612 *build/vignette.rds
0ecdbf4f832ab7678b81ee23d82104e1 *data/ATseqlengths.rda
3b85b7a3be9e2a65a7eeaf6125c15883 *data/fittedExample.rda
bd7026200a669c19651039027ffc372c *inst/doc/tutorial_RTIGER.R
f37b898c16d0656d2114d2937c06d7b5 *inst/doc/tutorial_RTIGER.Rmd
21ecb02e6cb828c5eb5a3d2b3687175f *inst/doc/tutorial_RTIGER.html
8312d1ce5c2e1dcc9e42df237790571a *inst/extdata/sampleAA.txt
cb9f998b5fa6adac5b2765e72b10fb7d *inst/extdata/sampleAC.txt
b1388c6512767e9e968c419de0c15fb7 *inst/extdata/sampleB.txt
bdf506eb6a8c2f96655ab7f5b4b642c5 *inst/julia/AuxilaryFunctions.jl
4b58d597948c83020c9cd4e2335316e5 *inst/julia/rHMM_methods.jl
fae48b8c7da2baa1fa164ed7416b534b *man/ATseqlengths.Rd
efcbb4dfdcc343d31933a8354dc244d4 *man/RTIGER.Rd
57a51aa9535ba8e5bb76866b264ae117 *man/RTIGERDataSet.Rd
e24219c9d77f51077fb61709cc18739d *man/calcCOnumber.Rd
f7c039fdefc2f31cd2099abeba632881 *man/dev.Rd
8071de10132b0822b37a5820cf31b94b *man/fit.Rd
4edc94822afcadac15fb236bd40e6286 *man/generateObject.Rd
27492471ba2a8c67b9e9fcf90e8fce52 *man/myDat.Rd
acb5b0765d8687a383a4fa643da989ee *man/optimize_R.Rd
bc9878521760c7431dd293a19548089f *man/plotCOs.Rd
021978a3f298f4a57a2fde7b3a911d24 *man/setupJulia.Rd
6dc3e9ca6b0ffcde2343fb9071447c70 *man/sourceJulia.Rd
39afcdf0f53b14384713266d21ab509c *vignettes/0001.jpg
f37b898c16d0656d2114d2937c06d7b5 *vignettes/tutorial_RTIGER.Rmd
