c7176bc70f66798eb5a5fa3c2e41c051 *DESCRIPTION
0c0080d828e632c89aab02fe8c963ed6 *NAMESPACE
ae389cb76560f6adaf8ae6aedd050ca0 *NEWS.md
eb5271fc7d9d97392d69eb476712da40 *R/ABCRef.R
7933d2b3480c74478603d5267e956823 *R/ABCSMC.R
e7e0882e8e2ac778d8b31e6bb45cb6d5 *R/PMCMC.R
2f4c14834c409f12e01d4e9b6ad40e3b *R/RcppExports.R
c8acf273b9c10f2f80966fbf3754b1fc *R/Rcpp_mparse.R
a94b800289d14e2bc56ee87a1676fc46 *R/SimBIID-package.R
58d333969c9a2fd5484da84ed82c2d8a *R/bisectTols.R
9ad49be0fadd356650ab2e5a18a9d042 *R/bootStates.R
cbf59217899c1c62ee592839a6150843 *R/checkInputs.R
6f4345c5dcb0fb6839313323878b9018 *R/compileRcpp.R
edbbeccccdd32e059c0c06dfae722041 *R/data.R
5f99d83f8f42c9bae33a72cf4c1ef548 *R/mparse.R
34408d7962ae9ccde34d93434edd3cd2 *R/mparseRcpp.R
60f9705aee8b286f6b9b88039393c283 *R/plotABC.R
c501e6b23231de600adc189b0870a44d *R/plotPMCMC.R
28a9f4f3ab71c007e6db132cca8c44c2 *R/plotSimBIID_runs.R
3e3759b702bea0a225bd44c658f4819e *R/predictPMCMC.R
72350e261531504c533bcce62b459099 *R/printABC.R
565ddd952f5ac29834188f296db52635 *R/printPMCMC.R
3ff79201a8158425a55611cc1b391b3a *R/printSimBIID_model.R
3ccb9a96253b8f89c739ef7f0035bf68 *R/printSimBIID_runs.R
cc90059c69240e06db88baa52e19111d *R/run.R
22824e515aaa409b4b265a717d14d8c0 *R/runProp.R
54155fc96f2f8becb9ddd1cadff20f25 *R/runRef.R
b9780ec17fba80deffcf5f7654e75a17 *R/summaryABC.R
53f38b81e9bd691d441fab572e5df816 *R/summaryPMCMC.R
a7ae68b56ad80e367ec4e2d0f084f0ef *R/windowPMCMC.R
1ae91436346f6bee6125d28348462184 *R/zzz.R
aeaeb6f2096395d438c1cead5048d86b *data/ebola.rda
d14684226d0d52b178051fb41325e330 *data/smallpox.rda
285ef2b56a46418f19020da496134e55 *inst/simFunction.R
e21f743e6c90dd16bf902de37cd398fc *man/ABCRef.Rd
a1e914f919a7d6e72ecbcd12bbdf7148 *man/ABCSMC.Rd
10437e7c6eff6e8894a5a8349dc309ac *man/PMCMC.Rd
e63a46ea1aa9c9870cad67b1adf29686 *man/SimBIID.Rd
d6a54028bcc618051d79000c2618abf2 *man/compileRcpp.Rd
405a65d4b73fc7949280855cc8c509a7 *man/ebola.Rd
98f4a471596dd854f81158dad8de5781 *man/mparseRcpp.Rd
a94a5f3ae7aa2776afa8272ddf81cc2c *man/plot.ABCSMC.Rd
6f045d358ce7784f16e9c6ccd028dacc *man/plot.PMCMC.Rd
1aa02b1f95927514d3d903cc22f8e912 *man/plot.SimBIID_runs.Rd
edb83a97f2c873986cd341b8a7ed53ac *man/predict.PMCMC.Rd
4992a62b9d83016d92c12ae5247ab6e5 *man/print.ABCSMC.Rd
90f76655578a7dd5ba298e4b657535f9 *man/print.PMCMC.Rd
a5c89f6beb628d4293f71e489f82775e *man/print.SimBIID_model.Rd
8094850e7d71632e951946eb4604b642 *man/print.SimBIID_runs.Rd
3e4cc30dc36baa385b9ac9d9dd29f82e *man/run.Rd
08d6f85854dc1b814f9c754a3b79d4a0 *man/smallpox.Rd
aa4902c0bfb89c87a1b44023cb38bb93 *man/summary.ABCSMC.Rd
a71d3f99ec50ac98a2bc8fe385a1ab0e *man/summary.PMCMC.Rd
c38330a6ee1bf26b8e53db9520263698 *man/window.PMCMC.Rd
cac6915460f5cbf1f935b0f834b81a4c *src/Makevars
cac6915460f5cbf1f935b0f834b81a4c *src/Makevars.win
b74be66efee7079d1cc0656fc77c2944 *src/RcppExports.cpp
6f94b69701a31a1d59e546272d84545d *src/adaptUpdate.cpp
f37051ced1f55f4c23dfe8cfd0f73ba1 *src/bootstrapParticleFilter.cpp
45792d0869094d9dac6c8ec686d6d777 *src/bootstrapParticleFilterState.cpp
d6bddf4ae5a4981839e76f0cb2004a32 *src/cholArma.cpp
85a0009c75c885b6ccedb65a435a66cb *src/functions.h
05dc0a787836d360c909da343d97add7 *src/mvrnormArma.cpp
504a1d5570c0b641d6d29789b9d8440a *src/pmcmc.cpp
cbe585167024670da4c183b92d69b02c *tests/testthat.R
1497197bd08ea1025fd48054856e5d93 *tests/testthat/_snaps/ABCRef.md
c1e23a678e8ecfbc8c21b41e58e1c5ef *tests/testthat/_snaps/ABCSMC.md
84ef15b4d9dc27269edf917f3f21d6c8 *tests/testthat/_snaps/PMCMC.md
e4fca422026309e3b6e055cb391bf1fe *tests/testthat/_snaps/run.md
095c0e656ef4e841d950ff64951ae521 *tests/testthat/test-ABCRef.R
423d953265a7547b8a46c6788a942c7a *tests/testthat/test-ABCSMC.R
3aec8a223d484e58e23a7e15eccaf0b5 *tests/testthat/test-PMCMC.R
94e4ec81ba55880374d655914284f772 *tests/testthat/test-run.R
