030a06f2da82ac7098aac8c758b402ce *DESCRIPTION
c56de7ff4d370add8e528a9b1d4cb032 *NAMESPACE
239b49f3d0e89c38c7aeaae8d2184888 *NEWS.md
af8538023d1fab695bd854e49ac2edf0 *R/extdata.R
f038c204426e07b840a9148d996d7fbb *R/getMinorMajorCopyNumbers.R
805e343c41ca9e2b551c1497775e542b *R/listDataSets.R
78dc878a52a72186a5c759a13fd588b0 *R/listTumorFractions.R
f9027602ae005776ad76cb5c8c4c71fc *R/loadCnRegionData.R
84f9d3b240bf3c4deabc42a4150a4bfd *R/loadDataSet.R
46d7e98e1fd3bcd0bccda027ac6bde00 *README.md
0fafaca99100ea858999bc370b0cc287 *build/vignette.rds
8c8ea0deab622f26a3feb90803c4fad1 *inst/CITATION
ba4a47466e30345e2ecbb656d03502f7 *inst/doc/acnr.R
ace0dbce999e35edbc70b2c3284a2dbe *inst/doc/acnr.Rmd
6902c52783809f3b58f61889663cc1d9 *inst/doc/acnr.html
37e15bd52636a59ba8b9d56cf017e652 *inst/doc/autocorrelation.R
21b7ffb88440bb4c53bd215f698a5477 *inst/doc/autocorrelation.Rmd
1cb75f9452d8a5efe828ab576fb57e85 *inst/doc/autocorrelation.html
37f5cf5084e96938edfea057d79bcf59 *inst/extdata/GSE11976_CRL2324.rds
06fafb6728f773b1c57f9e4131d9bb16 *inst/extdata/GSE13372_HCC1143.rds
1d9e4750fb50852fea566c6fe5ab421a *inst/extdata/GSE29172_H1395.rds
8783f9b89f3cc809f60843ebcc273374 *inst/preprocessing/GSE11976/00.PrepareData.R
4ca05bac5157a7dcd1e7ef19c08dfd84 *inst/preprocessing/GSE11976/01.defineCopyNumberSegments.R
1b40183914708a2e4c5ce2734e39e58f *inst/preprocessing/GSE11976/02.exportRegionData.R
0dc4b28ec524372e50cabbd0e8b3ae18 *inst/preprocessing/GSE11976/03.mergeCnRegionData.R
3fc90fa0a7d507bc3d77663be3ee2f3e *inst/preprocessing/GSE11976/03.plotRegions.R
874d8a8ca9aaadb78ac1340e64ca1513 *inst/preprocessing/GSE13372/00.install.R
068cbfd26badd4ee1ad40a8907459d96 *inst/preprocessing/GSE13372/01.checkAnnotationData.R
678685ad8ab612c5f6629d35ce10de09 *inst/preprocessing/GSE13372/01.downloadAnnotationData.R
a2ac3faaa10eaea833c53c769f393811 *inst/preprocessing/GSE13372/02.downloadRawData.R
3d221c454d38b4a6c0436e04c3684d37 *inst/preprocessing/GSE13372/03.doASCRMAv2.R
6344ac68a2de5ce65fb15ba60377fbc8 *inst/preprocessing/GSE13372/04.writeWholeGenomeData.R
dec8e5e124c3b93ca1000e734483f4e1 *inst/preprocessing/GSE13372/05.defineCopyNumberSegments.R
856b1be0d6d8021697da90ac3f4e4761 *inst/preprocessing/GSE13372/06.exportRegionData.R
4e28bfcc0686f7f44a273ca78b6196e0 *inst/preprocessing/GSE13372/07.mergeCnRegionData.R
874d8a8ca9aaadb78ac1340e64ca1513 *inst/preprocessing/GSE29172/00.install.R
068cbfd26badd4ee1ad40a8907459d96 *inst/preprocessing/GSE29172/01.checkAnnotationData.R
571f276b365d44384ee3041bf26c8e89 *inst/preprocessing/GSE29172/02.doASCRMAv2.R
c74749b3784e207b4877c423af86d842 *inst/preprocessing/GSE29172/03.writeWholeGenomeData.R
05496e6a9cd36797e4cd9cff58e27cc7 *inst/preprocessing/GSE29172/04.plotTracks.R
5a2b792c403731969bcd27eaa9ac856e *inst/preprocessing/GSE29172/05.defineCopyNumberSegments.R
57b5d815b331445d2a8712458465b84c *inst/preprocessing/GSE29172/06.plotCopyNumberSegments.R
a9b1a1a9dcd826200fc682f2a802858f *inst/preprocessing/GSE29172/07.exportRegionData.R
09076a24cfadf1a9ddf06aafc7846031 *inst/preprocessing/GSE29172/08.mergeCnRegionData.R
2c6ed3e561941fef9519edc2add31469 *inst/preprocessing/GSE29172/09.LightCnRegionData.R
6bbe89d3856439d5a89624c7b1b85d2c *man/GSE11976_CRL2324.Rd
09cb37312e6c931fac0d2008f5ced2a3 *man/GSE13372_HCC1143.Rd
cbc4b3bc915481a3a14af8d8a6f01ab6 *man/GSE29172_H1395.Rd
57f91763a1afed9c1f2df954c69dc533 *man/acnr-package.Rd
42d2ac2e85a1fa521bfeb814b2cd4fb9 *man/getMinorMajorCopyNumbers.Rd
c9683ea1f53205daafdeb0776cd8a1fc *man/listDataSets.Rd
4fcf9ea73d0d827eb8a833d104fd310b *man/listTumorFractions.Rd
6d18cded70dddade7d614dd3dc1ef433 *man/loadCnRegionData.Rd
7709e8cc16c4fea487b4ff3801937416 *tests/testthat.R
674e0c0394a6bdd9b30a0e9249be5d4e *tests/testthat/test_dataSetConsistency.R
193bd45d96668a594750f68211251558 *tests/testthat/test_germlineGenotypes.R
c6cf19e40c50a13d22871c7353596e39 *tests/testthat/test_monotonicCopyNumbers.R
392d584dfee99c7c3cda5306031a3bc8 *tests/testthat/test_tumorFractions.R
ace0dbce999e35edbc70b2c3284a2dbe *vignettes/acnr.Rmd
21b7ffb88440bb4c53bd215f698a5477 *vignettes/autocorrelation.Rmd
