7c275868808cbd8508d31dff9befec7b *DESCRIPTION
6c674c81b90cf8938647bf79ee7d7724 *NAMESPACE
01509b2a45eabaf23fb1cff6376e6264 *R/apply.scaling.R
1c0cfd1de57c1b19ac5a0f06e06d4522 *R/calculate.cis.matrix.R
03936f79585aea2611c077b9cb5a7417 *R/calculate.integrative.similarity.matrix.R
1b3499bbb312cfb88d00516ab56c419d *R/calculate.scaling.R
f588242738c10d52ad048492c6e8b8ab *R/cluster.patients.R
40ae9fd106f4984a4a36cb8f9ff023dd *R/combine.integrative.features.R
c4b79cf455d74e48069be87003b5a28d *R/create.autoencoder.R
c09371d4a6e23e165bce8f1974d2f3f5 *R/create.autoencoder.irf.matrix.R
4bdffd55f9c47df168375db4a91a0e1f *R/load.molecular.aberration.data.R
e6a34de54aa1202642319338284e1635 *R/read.scaling.factors.R
d877a94cb9c35f10fe1b75f517276f91 *R/write.scaling.factors.R
716d7e41c2f2215c59745f844588a54c *README.md
91b87777c526e0026187c708997477d7 *build/vignette.rds
a82f8696e8b2dfe3d948bf5310f19856 *inst/doc/iSubGenGuide.Rnw
5a691df9ea236fdefb5c28eaf9c010fb *inst/doc/iSubGenGuide.pdf
8245c2b7a251511f7056648140184ee4 *inst/exdata/cna_gene_recenter.txt
605d95998981d55c654c7bb478a3f1e1 *inst/exdata/cna_gene_rescale.txt
43c437ee1b3a2581db2e4f72bf50b897 *inst/exdata/cna_profiles.txt
1551dc238e5c5e727111cb9d0d42d005 *inst/exdata/grs_profiles.txt
33776971deb868dc9864e7391373b257 *inst/exdata/methy_gene_recenter.txt
7aeecb4ced3d3e00b177136205a31f3a *inst/exdata/methy_gene_rescale.txt
30e5e79ad7f4ef02d7e16f81fd54760a *inst/exdata/methy_profiles.txt
2a16be7d92a3a9c1b93614ab3cec40c4 *inst/exdata/non_coding_snv_profiles.txt
24f11c9590316793c0d7f3e8d0e7f745 *inst/exdata/snv_gene_recenter.txt
3aac9d95227e24bb3f904d957f0c88d6 *inst/exdata/snv_gene_rescale.txt
23aceb5d99f05b3703fb426b100cdd89 *inst/exdata/snv_profiles.txt
c1017a7b519fcc0b26c36037017ec719 *man/apply.scaling.Rd
edbb7120bc98fb14a6921a8e47bf53f8 *man/calculate.cis.matrix.Rd
d5783900922a63b175e194c2be8b098d *man/calculate.integrative.similarity.matrix.Rd
5bd82683faa353805dca38c9e31b587b *man/calculate.scaling.Rd
c4f40130dcdb97b96027f8272b906eee *man/cluster.patients.Rd
946e0b057a24a727bfc08fddd6853baf *man/combine.integrative.features.Rd
28b43b7a4ebe0bb7dc789c4acd54672c *man/create.autoencoder.Rd
d71e0ab5f8c495106a1199663b17f72c *man/create.autoencoder.irf.matrix.Rd
755f55861a121bc8bbf1456f67565dcc *man/load.molecular.aberration.data.Rd
6740b556b69cdd9b7d8fd46cad0efe65 *man/read.scaling.factors.Rd
8b5556a23625d597037a0eeb13363079 *man/write.scaling.factors.Rd
5dad7173f1a51a0452d89a9c604a25ea *vignettes/Figures/iSubGen_figure_methodology_autoencoders.png
d1cecf2d86db027be1f5570a2a78747b *vignettes/Figures/iSubGen_figure_methodology_correlations.png
c0e0ab32d1b261270c1a2feba3d1f63c *vignettes/Figures/iSubGen_figure_methodology_overview.png
a82f8696e8b2dfe3d948bf5310f19856 *vignettes/iSubGenGuide.Rnw
