8490bfa187d283fe105da0f913cac54f *DESCRIPTION
90bd581b72791438cb5e12176eb7ff3e *NAMESPACE
c7606d7865ea7e60d74619f553480661 *R/RcppExports.R
4a0280d39c78f9c0c19457de49869b43 *R/are_tmhs.R
61c76d5e4b1c1a3f50a8926c12db39b1 *R/are_valid_protein_sequences.R
cd5704b7f623915d04d9ff4878dddd88 *R/calc_distance_to_tmh_center_from_topology.R
b30b5ae17eb3205fc258f88412d84a85 *R/calc_distance_to_tmh_center_from_topology_str.R
a3b32976e32c98a31e17e6007065a5aa *R/check_protein_sequence.R
58c873f7fcaf40611c20079fbad7a6ee *R/check_protein_sequences.R
680ad2b9d29626abf36428ea880d126c *R/check_pureseqtm_installation.R
dc41d37636e998038336779676a7c122 *R/check_topology.R
73ee12f1c9a231cb8c70e5456b4a134f *R/check_topology_str.R
536bf9bb59549d52e02750b43c9f0ac8 *R/convert_tmhmm_to_pureseqtm_topology.R
9270a9d8183a736768a33dbee017e228 *R/count_n_tmhs.R
661d4b688aa788a2804bdf481c548364 *R/create_pureseqtm_files.R
6aa7d0f72556723b9f61968b1b4861bd *R/create_pureseqtm_proteome_file.R
6fa09820476cb48ea72dbf86f242e77a *R/default_params_doc.R
d9ef865f064d887cc482681f50144c35 *R/get_default_pureseqtm_folder.R
977e30d2de8b0118a17bf4eadaf37dc5 *R/get_example_filename.R
650aa0c8a2055de9619466ca09867037 *R/get_example_filenames.R
0b02efd7ac25f4ec29d4c5c122abb538 *R/get_pureseqtm_url.R
29a0af41ac0a474e0fdfc8e76800b5c7 *R/get_pureseqtm_version.R
b8c9f478a099e9ba53455606ec82f271 *R/install_pureseqtm.R
de9edce89e985e47c0aba5b4411fd199 *R/is_on_ci.R
d5a40abbc981f72912a061626f181582 *R/is_protein_name_line.R
0889a351a95d71c2cf06d1f63e02aaab *R/is_pureseqtm_installed.R
6854d99a1e52c3cde3bc1567022714f6 *R/is_tmh.R
7a36c3c4d425c56104a57993d7600b82 *R/is_topology_line.R
dbf491ae0c04770442a1020866710e3a *R/is_valid_protein_sequence.R
330203105f9db9fbfca39efe0ce3d013 *R/load_fasta_file_as_tibble.R
63189d61a51bd7bab0e3ec6cc67b870d *R/load_fasta_file_as_tibble_cpp.R
3c49921fc709e8b4afb40c3f3fd345c9 *R/load_fasta_file_as_tibble_r.R
f80824fef8eeb7230910b7309c3f93f7 *R/load_topology_file_as_tibble.R
1171ba0d52291ecf90e7b9a810705ed9 *R/mock_predict_topologies_from_sequences.R
f87f8de81183a842a041abe3548c20d2 *R/mock_predict_topology.R
de1aa39fe301105750eb4a83aa270bcc *R/parse_pureseqtm_proteome_text.R
a9a2b9e9bb4f8f11f72a25fe100c8354 *R/plot_topology.R
105e04c1e1fa923d9374c2cd8c7422c5 *R/predict_topologies_from_sequences.R
7eb971255f41c7f8d1d50b5ca647c9f5 *R/predict_topology.R
fcccfe1172c8ced920fdcf9835063d94 *R/predict_topology_from_sequence.R
8d5ddbd7c09e821237f5655cb6f6a666 *R/pureseqtmr.R
998ff83b0e045bd8ba1b027e8c18e83b *R/pureseqtmr_report.R
bebf51e47c06f99d27f6df6408a9aeb8 *R/run_pureseqtm_proteome.R
c712436860bf74d4923858cd6091d7e7 *R/save_tibble_as_fasta_file.R
4861b9c432046e52a7743feba96179c7 *R/tally_tmhs.R
be1e4790a4d87f5e70ce74ca9e09636c *R/uninstall_pureseqtm.R
ed4b274b617548212feb2d7b564eb67e *R/use_rcpp.R
0cf581f17d03a5e360725e6cc3105d60 *build/vignette.rds
61f217d2208ce5e714a4c51f55bad2b5 *inst/doc/demo.R
c4f301eb414a4447b85bb338a21dc1cd *inst/doc/demo.Rmd
e6e0cae1c15cf6c4d8c457621a0233a5 *inst/doc/demo.html
c9b576c0623cf003e651a9d814056f76 *inst/extdata/100507436.topo
c48900a26dbc8965e6ca3515fb9a53e1 *inst/extdata/5728.fasta
a8adc3962d7dbd6d545edae95be14676 *inst/extdata/5728.topo
4cc97567cbe5ff55f8590ba3f9fe0967 *inst/extdata/UP000005640_9606_no_u.tmhmm
a87adc0929500202610317979fd5c3c3 *inst/extdata/UP000464024.fasta
d364fd52178bd4312a5146989d1d6530 *inst/extdata/garbage.fasta
0d311bc7e748d71a47e64cb6690c29da *inst/extdata/human_selenoproteins.fasta
5a9fd0e8121dec7b0f6ebb42eacd0ced *inst/extdata/short.fasta
fd4db2028cb41a5bd5040a7d4dbf7747 *man/are_tmhs.Rd
5a8af5b24370aba5e1ecc764e50b9896 *man/are_valid_protein_sequences.Rd
c973e2a2e20341050edb19480b4eeef1 *man/calc_distance_to_tmh_center_from_topology.Rd
18f7a83bae7375faeb1901b03a713c26 *man/calc_distance_to_tmh_center_from_topology_str.Rd
53091341ebacd2ccd73336624d56a62a *man/calc_distance_to_tmh_center_from_topology_str_cpp_stl.Rd
eef836066c28c968dc011064e2b8931c *man/check_protein_sequence.Rd
dfb0c5db62bb84b49001fb512aab36e5 *man/check_protein_sequences.Rd
1437659836af943934dab41ef8fa65db *man/check_pureseqtm_installation.Rd
19244490a22dcd54a2b2b38eb0610fc9 *man/check_topology.Rd
e1f64afbd009939677108f1e75cb7aa9 *man/check_topology_str.Rd
a12889c0fe9a4fbebafe006c70051ddc *man/convert_tmhmm_to_pureseqtm_topology.Rd
fa63fcb2837dfb8a8f8040e8a0bf0377 *man/count_n_tmhs.Rd
452a6fc26a50cded18f7a7fdbc46b5ca *man/create_pureseqtm_files.Rd
8d6b18e8bdd977b59f0febe64247a74e *man/create_pureseqtm_proteome_file.Rd
10c754921dbf82aaf1f53f6790b18dd5 *man/default_params_doc.Rd
f7de71e5ff24145a37bf281e4d155cfa *man/figures/AppVeyor.png
3f25ab37a1f6270f76c025cf6eda5421 *man/figures/Codecov.png
b55c56f3943a394162527954ca4a3009 *man/figures/GitHubActions.png
4f9bce317a2b82518737a7ee7381c2ec *man/figures/TravisCI.png
4974742b25d647dd700c95636995d382 *man/figures/sars_cov_2_topology.png
91c208cf797457e7321ed77acb7b3f53 *man/get_default_pureseqtm_folder.Rd
99bb30dfa4f7b453a7885c62ab95e465 *man/get_example_filename.Rd
1cd906c72ed06c8192aef3cf93ee7b0c *man/get_example_filenames.Rd
f855fd472d6a67938ec15e14b446d526 *man/get_pureseqtm_url.Rd
935a43dbdd9ae144c83f24f1ea51b6d9 *man/get_pureseqtm_version.Rd
e9ba4b61e082ae93880773a0a530ca6f *man/install_pureseqtm.Rd
1940b05f4aa240f792116e0c95879f86 *man/is_on_appveyor.Rd
13835e4651821606166013d83ac87732 *man/is_on_ci.Rd
04c7cdf7697cc2e071f30ae4d963e36b *man/is_on_github_actions.Rd
6bdfaecd7856b2a4576b73e2633311cc *man/is_on_travis.Rd
bd746b895d7732263513ab144891a4f7 *man/is_protein_name_line.Rd
f7e5f323248ec10b57a6bdbfe1952602 *man/is_pureseqtm_installed.Rd
ecfcd4af6c061cdb405574dcadadb9d6 *man/is_tmh.Rd
f9efcaeea3bad8024fa4c9450c544ea4 *man/is_topology_line.Rd
320377dec8c86f3ed093cfbf06994b17 *man/is_valid_protein_sequence.Rd
164bbe9ed2b019950d4552f37e976c9c *man/load_fasta_file_as_tibble.Rd
833d610c339d50d51a361b2defab39e3 *man/load_fasta_file_as_tibble_cpp.Rd
350d31a39d36d0d9ee70aee9b47bd951 *man/load_fasta_file_as_tibble_cpp_raw.Rd
320ac34346252dbaa54f058ed8aec803 *man/load_fasta_file_as_tibble_r.Rd
e18658a362774a29959aa8c9646fcea4 *man/load_topology_file_as_tibble.Rd
1d812d2d9302bfd2f8008d9110f69096 *man/mock_predict_topologies_from_sequences.Rd
4fb0edbe25504624e7eab3c82bf0aad8 *man/mock_predict_topology.Rd
dfe8fc25581b976ac6a8b977ea2e069d *man/parse_pureseqtm_proteome_text.Rd
81578d487c3b47b26e0deb795d0efdd2 *man/plot_topology.Rd
bafcc27a2b2c5b47b3f6d37e38427eaf *man/predict_topologies_from_sequences.Rd
1ffdaeba1354a8d07e351392d2b9319f *man/predict_topology.Rd
b013dbcdc09f4262532377eafd528ef5 *man/predict_topology_from_sequence.Rd
075892cb6d60f8c1bdbf0397b53aee2f *man/pureseqtmr.Rd
ad5ec2546da3b12e6da965fe730e849d *man/pureseqtmr_report.Rd
461e49e420a3642b64c02a69e79eb9f9 *man/run_pureseqtm_proteome.Rd
0554f86e80d1f60f0fdbb27a47bf7fcd *man/save_tibble_as_fasta_file.Rd
1e15001a0e07e44822d04a729cc92846 *man/tally_tmhs.Rd
70ab387528928b71a8fcd7f0772074b1 *man/uninstall_pureseqtm.Rd
faa2e4ba8ad37a1beceed4a298f31769 *src/RcppExports.cpp
59c3774840778b152cce6d32c44275f9 *src/calc_distance_to_tmh_center_from_topology_str_cpp_stl.cpp
e482a0cfbe18c00fbed34004e012980d *src/calc_distance_to_tmh_center_from_topology_str_cpp_stl.h
68c9bd713f39f21f7a16ec0f63a3216a *src/load_fasta_file_as_tibble_cpp_raw.cpp
01d47764c2b604e6e96e9c871b07c3e9 *src/load_fasta_file_as_tibble_cpp_raw.h
474caf3eeeda13760579e51cc3d2e51f *src/load_fasta_file_as_tibble_cpp_stl.cpp
c1ba5a2eac6230601ee02c43b301ee40 *src/load_fasta_file_as_tibble_cpp_stl.h
c4f301eb414a4447b85bb338a21dc1cd *vignettes/demo.Rmd
