146890618278e035dffb09ce1062713d *DESCRIPTION
a0344bb134f2ae4da62282028f8831c5 *LICENSE
3fe56677db5cd7a628c39596b2c89edc *NAMESPACE
48e0ac8185afccb62d7be4807426788c *NEWS.md
800664f43491073f00eb0e2009acdbba *R/add_metadata.R
3eb045e429c627559b65397a377c071d *R/assign_index_peaks.R
0bc9003e12ca5395e2d70e0e0518c30f *R/calculate_instability_metrics.R
8a6bdee6b6b3b9682f3c89546e0ab787 *R/call_repeats.R
62bde9cbfcfb2bbb480b9137ef87e4fa *R/classes.R
7e143afc97af8347170defa39b184b45 *R/constructors.R
5e379027b799a194257b0cde3936cb87 *R/data.R
a8162720cbf8d72a29f8fc87418d354d *R/extract_functions.R
fa1188c82cdcf953dbdab9d676a64924 *R/find_alleles.R
08a71d75b9cbfb9c3cd4fa28bd94f547 *R/find_fragments.R
105fdd4f3b4f84943bbda2897495677c *R/find_ladders.R
c6e2fd25764d116057a4aa9bab00e7f3 *R/fix_ladders_shiny_app.R
c0468aa6be574a47ddfe94d8fdf6a69f *R/misc.R
ebfd7e7fc72d278d5f51951dc8e00ba2 *R/plotting.R
bd1cf58b9746b89823f0b9638d5998b9 *R/read_fsa.R
5e51e47ad82ca56fcd81467a7d71faa2 *R/trace-package.R
f621176f8d200df4a4f805c3914572d4 *README.md
b54db8794555342c4feee5fe0b1b8f5b *build/partial.rdb
15afc8759d999ec61e34c85bb305b80b *build/vignette.rds
cc8bf538c29712254f679631fe93cb9f *data/cell_line_fsa_list.rda
a7bda66b6a5898bea67e262fe37c0fbe *data/example_data.rda
7b6d405fc8151a90c79bde191589595a *data/example_data_repeat_table.rda
c764c66e96623bf155f1b2a25390d9a1 *data/metadata.rda
fbb5090f70bc0d41574e126176d59d2a *inst/CITATION
35b2254eeb35263c86c2bc6fb99384b9 *inst/doc/plotting_traces.R
b01118b8eeed20b6f8f5ca3738bb58bd *inst/doc/plotting_traces.Rmd
161237fbfacdf54027eb15fd4379a3b0 *inst/doc/plotting_traces.html
a634a4330e3c6d358a3330bbb3d5c9d1 *inst/extdata/_extensions/template.qmd
a0379ce8117263fad23f8a51eeee28e6 *man/add_metadata.Rd
90bf9ff06858fcda1792a0b52ebbbae8 *man/assign_index_peaks.Rd
0b761f5c652c53dcc18264baf35f160e *man/calculate_instability_metrics.Rd
3a66f9c9c9f4f39e8c3702ec833c3edd *man/call_repeats.Rd
975bff74f2509ee01a3fc7c8e3721cda *man/cell_line_fsa_list.Rd
08ad9033a30cb5e09ad646fdc7ad22dd *man/example_data.Rd
0fb19cd472f0afba7cb98f9a2930baf2 *man/example_data_repeat_table.Rd
d0da0948e35bb5c877d72c9c19808df9 *man/extract_alleles.Rd
4ac86e9014090cbd9288965ccea45ad6 *man/extract_fragments.Rd
3f9a3a4b68748f3eb38e9667f81fb2a8 *man/extract_ladder_summary.Rd
c8a8d899d1a0349194f42ae331ca0442 *man/extract_repeat_correction_summary.Rd
ba526a51daf024bcff64d8e935c20f11 *man/extract_trace_table.Rd
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2a67fbe6904208dd16efbbab2a6874d6 *man/find_ladders.Rd
fa87391e2537579bfcda22cba118a964 *man/fix_ladders_interactive.Rd
85882e103a622e0fb40214f012ca4cdc *man/fix_ladders_manual.Rd
3f715beb9917193d0a18bc06a8678a93 *man/fragments.Rd
7021536857c46dad54fe1a72c8eb606f *man/fragments_repeats.Rd
9189afe5fc12b01d8083488337c604ae *man/fragments_trace.Rd
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c4e66cf385e25ece41ee26d2802c5cd6 *man/metadata.Rd
ad1a6a8cd8c28bef87ee18ba865197ec *man/peak_table_to_fragments.Rd
3728ef397fabe574063c0880537d0d8c *man/plot_batch_correction_samples.Rd
080198c7dfc3c074ff97407828aa9cdd *man/plot_data_channels.Rd
43ce39e62c55c354b00fef448b057e0e *man/plot_fragments.Rd
a771df9bc978bacbd118601b370cef4a *man/plot_ladders.Rd
1efb01ed44c1b772b2e6878f03b04f08 *man/plot_repeat_correction_model.Rd
e0799bb1277b0c5f38432cea5fc32e4f *man/plot_traces.Rd
6e8edaa0403dcc1e06a14bbccd0dc668 *man/read_fsa.Rd
45f13629b4d805cb6d7f70d6118efff0 *man/remove_fragments.Rd
bb376228ad6d5d9254c4f0736c7957a1 *man/repeat_table_to_repeats.Rd
8e01d4790d087a1e61634942034032ba *man/trace-package.Rd
cafddcd2589c2d023befd01b88968237 *tests/testthat.R
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b842ab62712d674604b216e0de36a82a *tests/testthat/test-assign_index_peaks.R
a29b0bf88772c989b5f9780f8acbc369 *tests/testthat/test-calculate_instability_metrics.R
367a9867f06a56beee66aaee394069aa *tests/testthat/test-call_repeats.R
d7fb8597ca6ce98c6bc331dd829a03e4 *tests/testthat/test-classes.R
f4231fe53363c95845a600a340b9febd *tests/testthat/test-constructors.R
a83dea6fd483ff145300d2aaab513f28 *tests/testthat/test-extract_functions.R
798cf873fba11fa43764d522756c3950 *tests/testthat/test-find_alleles.R
475e362c78695699b5311262e19ed9d2 *tests/testthat/test-find_fragments.R
f983d31ec804aed44c6588324f93291f *tests/testthat/test-find_ladders.R
267ac870a6eb1db722c4154e9924dac2 *tests/testthat/test-full-pipeline.R
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test-plotting.R
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test-read_fsa.R
1bf6e12dd5fc723df9f7211440871465 *tests/testthat/test-shinytest2.R
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test-tidiers.R
b01118b8eeed20b6f8f5ca3738bb58bd *vignettes/plotting_traces.Rmd
