7379cc09cad4d82a0db54768c3435996 *DESCRIPTION
5eaa0d90e5a6d4dd6d2d0bdc983813a1 *NAMESPACE
df7376743d71e0f1944cd9968e070070 *R/RcppExports.R
e5bcc5b06f3513fb681e3e4e408d57d4 *R/calc_act.R
918980252ad0e6153c4addbed0505df2 *R/calc_ess.R
fe84ef7d90e4bff8ff936d71bd3f3f2b *R/calc_esses.R
f67237557570184b500fd483017641f3 *R/calc_geom_mean.R
9a01e626d56ea15281c52a3eec87e483 *R/calc_hpd_interval.R
0a75af7df1a9858b720301af5408b560 *R/calc_mode.R
577a9958c6330fc30f3ac58973639fce *R/calc_stderr_mean.R
1247e29587aa14d944a2eec57576b9fc *R/calc_summary_stats.R
45c8dda8358de3d80a300026f8a98a21 *R/check_trace.R
e27c2439865e7f5b20c5bc62997c7533 *R/count_trees_in_file.R
78925331bf9fa3741577ed79c8a57877 *R/cs_std_dev.R
48ff44456bee70947132daf7f8587a8a *R/default_params_doc.R
05eaaa6c8c48e83bdeaf836936ba994a *R/extract_operators_lines.R
1b772d6e20c3a88906f202708426dbc6 *R/get_path.R
35ea470a901ae718b307f98f9979aaf1 *R/get_paths.R
489b013e5e864b3a30143af8d7f67e8a *R/get_tracerer_tempfilename.R
fd05481eb859c89f37ddf55ac4c7542b *R/is_posterior.R
0245d2e490f839b0f1a96a7b7bf605cd *R/is_trees_file.R
1fe1d33c1a8abb926fb872438ed42abd *R/is_trees_posterior.R
a423c63c9db9ef535344dd1f089e0c1c *R/parse_beast_log.R
00186a01acce59b183592cf94a64d976 *R/parse_beast_output_files.R
4f8f9058005b55ceed94bf5ffa5d9a11 *R/parse_beast_posterior.R
3f6a8a38d13b825b07118723193de751 *R/parse_beast_state.R
d08a4d5fa75e51641ad077ba65181099 *R/parse_beast_tracelog_file.R
df851c749d31af62b22e66d7a6fff32e *R/parse_beast_trees.R
2f81fc551911245797ce1a60dc0e2957 *R/remove_burn_in.R
c1850db5fa8458c870c335b264e523b7 *R/remove_burn_ins.R
7ae3ebcc4df04788a3744f180140afd7 *R/save_beast_estimates.R
49ba94622ba35da925323d73387fde32 *R/save_beast_trees.R
6dd4dda6314d2a3b127d6bd804f828c0 *R/tracerer-package.R
6d4180b809b3a0f120285df3dacca566 *build/vignette.rds
fbf1b7cb8e1e4bd94845c6b29b206273 *inst/CITATION
48ce6093de6cde188aba83b5a726018c *inst/WORDLIST
8b766acb4e9aba6c717a69823085f18c *inst/doc/demo.R
0a2cf552c8b62c42d1a192aa3f8f196b *inst/doc/demo.Rmd
a9f1c3155613df38a964004d248bf390 *inst/doc/demo.html
3b024a9ad9e6e28be76783920a2c2688 *inst/extdata/anthus_2_4.log
ed473df6c85bcede8fa60a1f8230b30c *inst/extdata/anthus_2_4.state
107b03e0c328c1d2735b8f35d0fe0b01 *inst/extdata/anthus_2_4.xml
ec9d4622f382e3e582f02e19f6c0186f *inst/extdata/anthus_2_4_a.trees
045f10431fb1a789198c59fb5e4efbdc *inst/extdata/anthus_2_4_b.trees
0eedfd95a1fff834d513246b4e4624e2 *inst/extdata/anthus_aco.fas
93d45a2f0c0145ebfebdedeb073025f1 *inst/extdata/anthus_nd2.fas
b8231c2de96de5d0c4ab0082a38c41d5 *inst/extdata/beast2_example_output.log
f83191933040361f729577af64c44110 *inst/extdata/beast2_example_output.trees
346226afa164793704af01106aa3b2d8 *inst/extdata/beast2_example_output.xml
5ac7281e62e96d3c330bb6072aa6096d *inst/extdata/beast2_example_output.xml.state
7905c7b1fc3c7f12f2c9502608fa7c92 *inst/extdata/mcbette_issue_8.trees
e998f1ca74b38af5aff9d901fd8251e7 *inst/extdata/missing_end.trees
9344047dcd5ba98ddbb9b12504eef235 *inst/extdata/unplottable_anthus_aco.trees
6707d943f439fce866e25757938c30ab *man/calc_act.Rd
22f7488c5ff974a00d7e840c1e136469 *man/calc_act_cpp.Rd
d56d541d8c9529107b09d35e7c8a9344 *man/calc_act_r.Rd
1b02011a480e887773bdb762cc2b47da *man/calc_ess.Rd
9042724af54fc53c2df6dfcb6cab4df8 *man/calc_esses.Rd
212b65badb272907ec3470d6a9dedac2 *man/calc_geom_mean.Rd
810ca7818a5adbf27810492e18c8f213 *man/calc_hpd_interval.Rd
7be1e38d43b4634c95fd084a16d5dc2d *man/calc_mode.Rd
632ac9ff4f736492d17b4109dfe830fa *man/calc_std_error_of_mean_cpp.Rd
84b05ca855e5061933023a6f2e5e2951 *man/calc_stderr_mean.Rd
53c22104d836ac4602d0aa1eb7ba9943 *man/calc_summary_stats.Rd
64059fcb16aa89aa56f5a8d9eb1d0dc0 *man/calc_summary_stats_trace.Rd
3886db867354d05603f24b0a6f840711 *man/calc_summary_stats_traces.Rd
82313aaac069ab5369ee94c34cfc3d94 *man/check_trace.Rd
bcde046eaa024985417a0d5fe7e2524e *man/count_trees_in_file.Rd
9f3d14c91727fa7429970e013c3dbbe3 *man/cs_std_dev.Rd
b27ea36fd6192a79da4169df11b21e36 *man/default_params_doc.Rd
db790d0c16ddc189fcad308179227d78 *man/extract_operators_lines.Rd
f7de71e5ff24145a37bf281e4d155cfa *man/figures/AppVeyor.png
3f25ab37a1f6270f76c025cf6eda5421 *man/figures/Codecov.png
b55c56f3943a394162527954ca4a3009 *man/figures/GitHubActions.png
4f9bce317a2b82518737a7ee7381c2ec *man/figures/TravisCI.png
c07f98fce64224bc36d52026e8ef40f8 *man/figures/tracerer_logo.png
4ffee2e9c722d35ce5b671d13231f00e *man/get_tracerer_path.Rd
c6c5f0824269e1eb03ad95f895fc365b *man/get_tracerer_paths.Rd
87fbe6fdb17e246dd580dccbf13189b4 *man/get_tracerer_tempfilename.Rd
3b46524121e5ca307b319d148d97a1b5 *man/is_posterior.Rd
c222f0331eb6427c615d4e6c8458f2c7 *man/is_trees_file.Rd
f06528a692ca210afd6800680afc64d5 *man/is_trees_posterior.Rd
30088586036adc5dd3fd17492b34c09f *man/parse_beast_log.Rd
76a1690c37db00cabd26f68424c749f9 *man/parse_beast_output_files.Rd
ad5fcd047bea8f730319409f420a2d87 *man/parse_beast_posterior.Rd
8d6086c36d0ecb008ce0f1e4ab16222d *man/parse_beast_state_operators.Rd
152bd8539c020734dd2058ee384b5002 *man/parse_beast_tracelog_file.Rd
bb8c2ab77216efbafadf9ae7064219be *man/parse_beast_trees.Rd
3a8372771c2f7e447e4279026b768720 *man/remove_burn_in.Rd
1d352449429a0ab818d4000f3bd09eaf *man/remove_burn_ins.Rd
97fe6f6c1e4092201769cb29c6557567 *man/save_beast_estimates.Rd
904dc96f5cd112457f69ff7347deb56c *man/save_beast_trees.Rd
8b71505233998be6208ffff0b7de66d7 *man/tracerer-package.Rd
2ff163e12cb5e171c9d07bb74d38868d *src/RcppExports.cpp
0f4e9e12f4996648bd0af0156d4d1a83 *src/calc_act_cpp.cpp
35d34fbde8e5a56972c72df707484233 *src/calc_act_cpp.h
ad741e0ae5c31e93b0994f2abe45116d *src/calc_std_error_of_mean_cpp.cpp
5bf25b7bf60f13aa1772467ce8ade52f *src/calc_std_error_of_mean_cpp.h
0a2cf552c8b62c42d1a192aa3f8f196b *vignettes/demo.Rmd
8f440d5ac99cd59bf0358d79149231a5 *vignettes/densitree_example_output.png
413ee70600b6e3bd87cc7c0b2bddc005 *vignettes/tracer_distr_posterior.png
bdcdd370c9ea76c571ad8138e1937687 *vignettes/tracer_example_output.png
8d16e3a317b24da4b09c4c7cb40482fa *vignettes/tracer_trace_posterior.png
c07f98fce64224bc36d52026e8ef40f8 *vignettes/tracerer_logo.png
