Last updated on 2025-12-04 09:49:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 12.97 | 98.60 | 111.57 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 9.23 | 71.95 | 81.18 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 51.00 | 128.20 | 179.20 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 87.00 | 89.85 | 176.85 | ERROR | |
| r-devel-windows-x86_64 | 1.0.0 | 12.00 | 117.00 | 129.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 12.12 | 90.24 | 102.36 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 11.70 | 91.43 | 103.13 | OK | |
| r-release-macos-arm64 | 1.0.0 | 4.00 | 24.00 | 28.00 | OK | |
| r-release-macos-x86_64 | 1.0.0 | 12.00 | 93.00 | 105.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 13.00 | 117.00 | 130.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 4.00 | 29.00 | 33.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.0 | 15.00 | 105.00 | 120.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 19.00 | 126.00 | 145.00 | OK |
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘automatedRecLin-Ex.R’ failed
The error most likely occurred in:
> ### Name: custom_rec_lin_model
> ### Title: Create a Custom Record Linkage Model
> ### Aliases: custom_rec_lin_model
>
> ### ** Examples
>
> if (requireNamespace("xgboost", quietly = TRUE)) {
+ df_1 <- data.frame(
+ "name" = c("James", "Emma", "William", "Olivia", "Thomas",
+ "Sophie", "Harry", "Amelia", "George", "Isabella"),
+ "surname" = c("Smith", "Johnson", "Brown", "Taylor", "Wilson",
+ "Davis", "Clark", "Harris", "Lewis", "Walker")
+ )
+ df_2 <- data.frame(
+ "name" = c("James", "Ema", "Wimliam", "Olivia", "Charlotte",
+ "Henry", "Lucy", "Edward", "Alice", "Jack"),
+ "surname" = c("Smith", "Johnson", "Bron", "Tailor", "Moore",
+ "Evans", "Hall", "Wright", "Green", "King")
+ )
+ comparators <- list("name" = jarowinkler_complement(),
+ "surname" = jarowinkler_complement())
+ matches <- data.frame("a" = 1:4, "b" = 1:4)
+ vectors <- comparison_vectors(A = df_1, B = df_2, variables = c("name", "surname"),
+ comparators = comparators, matches = matches)
+ train_data <- xgboost::xgb.DMatrix(
+ data = as.matrix(vectors$Omega[, c("gamma_name", "gamma_surname")]),
+ label = vectors$Omega$match
+ )
+ params <- list(objective = "binary:logistic",
+ eval_metric = "logloss")
+ model_xgb <- xgboost::xgboost(data = train_data, params = params,
+ nrounds = 100, verbose = 0)
+ custom_xgb_model <- custom_rec_lin_model(model_xgb, vectors)
+ custom_xgb_model
+ }
Warning in throw_err_or_depr_msg("Parameter(s) have been removed from this function: ", :
Parameter(s) have been removed from this function: params. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
Error in xgboost::xgboost(data = train_data, params = params, nrounds = 100, :
argument "y" is missing, with no default
Calls: <Anonymous> -> process.y.margin.and.objective -> NROW
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [1s/26s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("automatedRecLin", ncpu = 1)
+ }
starting worker pid=2934496 on localhost:11531 at 11:07:19.697
test_comparators.R............ 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.3s<1b>[0m
test_comparison_vectors.R..... 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.8s<1b>[0m
kliep function error: missing value where TRUE/FALSE needed
========================================================
kliep function error: missing value where TRUE/FALSE needed
========================================================
test_mec.R.................... 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m4.3s<1b>[0m
OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Error in checkForRemoteErrors(val) :
one node produced an error: argument "y" is missing, with no default
Calls: <Anonymous> ... clusterApply -> staticClusterApply -> checkForRemoteErrors
Warning messages:
1: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
2: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
3: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
4: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
5: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
6: In throw_err_or_depr_msg("Parameter(s) have been removed from this function: ", :
Parameter(s) have been removed from this function: params. This warning will become an error in a future version.
7: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
8: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘tinytest.R’ [1s/41s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("automatedRecLin", ncpu = 1)
+ }
starting worker pid=3286618 on localhost:11463 at 12:02:26.657
test_comparators.R............ 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.6s<1b>[0m
test_comparison_vectors.R..... 2 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m0.3s<1b>[0m
kliep function error: missing value where TRUE/FALSE needed
========================================================
kliep function error: missing value where TRUE/FALSE needed
========================================================
test_mec.R.................... 11 tests <1b>[0;32mOK<1b>[0m <1b>[0;34m8.8s<1b>[0m
Error in checkForRemoteErrors(val) :
one node produced an error: argument "y" is missing, with no default
Calls: <Anonymous> ... clusterApply -> staticClusterApply -> checkForRemoteErrors
Warning messages:
1: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
2: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
3: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
4: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
5: In check.sigma(nsigma, sigma_quantile, sigma, dist_nu) :
There are duplicate values in 'sigma', only the unique values are used.
6: In throw_err_or_depr_msg("Parameter(s) have been removed from this function: ", :
Parameter(s) have been removed from this function: params. This warning will become an error in a future version.
7: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
8: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc