CovidMutations: Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease
2019)
A feasible framework for mutation analysis and reverse transcription
polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including
mutation profile visualization, statistics and mutation ratio of each assay.
The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in
large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020)
<doi:10.20944/preprints202004.0529.v1>.
| Version: |
0.1.3 |
| Depends: |
R (≥ 3.6) |
| Imports: |
ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils, ggpubr, dplyr, VennDiagram |
| Suggests: |
testthat |
| Published: |
2020-09-18 |
| DOI: |
10.32614/CRAN.package.CovidMutations |
| Author: |
Shaoqian Ma  [aut,
cre],
Yongyou Zhang
[aut] |
| Maintainer: |
Shaoqian Ma <shaoqianma at qq.com> |
| BugReports: |
https://github.com/MSQ-123/CovidMutations/issues |
| License: |
Artistic-2.0 |
| URL: |
https://github.com/MSQ-123/CovidMutations |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| In views: |
Epidemiology |
| CRAN checks: |
CovidMutations results |
Documentation:
Downloads:
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