mclink: Metabolic Pathway Completeness and Abundance Calculation

Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies. Supports both completeness (presence/absence) and abundance-weighted analyses. Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.

Version:	1.1
Depends:	R (≥ 3.5)
Imports:	data.table (≥ 1.17.0), dplyr (≥ 1.1.4), stringr (≥ 1.5.1), tibble (≥ 3.2.1), utils
Published:	2025-08-22
DOI:	10.32614/CRAN.package.mclink
Author:	Liuyang Li [aut, cre]
Maintainer:	Liuyang Li <cyanobacteria at yeah.net>
BugReports:	https://github.com/LiuyangLee/mclink/issues
License:	GPL-3
URL:	https://github.com/LiuyangLee/mclink
NeedsCompilation:	no
Materials:	README
CRAN checks:	mclink results

Documentation:

Reference manual:

mclink.html , mclink.pdf

Downloads:

Package source:	mclink_1.1.tar.gz
Windows binaries:	r-devel: mclink_1.1.zip, r-release: mclink_1.1.zip, r-oldrel: mclink_1.1.zip
macOS binaries:	r-release (arm64): mclink_1.1.tgz, r-oldrel (arm64): mclink_1.1.tgz, r-release (x86_64): mclink_1.1.tgz, r-oldrel (x86_64): mclink_1.1.tgz

Linking:

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